Shelly's Publications

  1. Kelly, S. D., Wu, W. M., Yang, F., Criddle, C. S., Marsh, T. L., O'Loughlin, E. J., Ravel, B., Watson, D., Jardine, P. M. and Kemmer, K. M. (2010). "Uranium Transformation in Static Microcosms." Environ. Sci. & Technol. 44: 236-242.

  2. Qafoku, N. P., Kukkadapu, R. K., McKinley, J. P., Arey, B. W., Kelly, S. D., Wang, C. M., Resch, C. T. and Long, P. E. (2009). "Uranium in Framboidal Pyrite from a Naturally Bioreduced Alluvial Sediment." Environmental Science & Technology 43(22): 8528-8534.

  3. Luo, W. S., Kelly, S. D., Kemner, K. M., Watson, D., Zhou, J. Z., Jardine, P. M. and Gu, B. H. (2009). "Sequestering Uranium and Technetium through Co-Precipitation with Aluminum in a Contaminated Acidic Environment." Environmental Science & Technology 43(19): 7516-7522.

  4. Mishra, B., Boyanov, M. I., Bunker, B. A., Kelly, S. D., Kemner, K. M., Nerenberg, R., Read-Daily, B. L. and Fein, J. B. (2009). "An X-ray absorption spectroscopy study of Cd binding onto bacterial consortia." Geochimica Et Cosmochimica Acta 73(15): 4311-4325.
  5. Kelly, S. D., Bare, S. R., Greenlay, N., Azevedo, G., Balasubramanian, M., Barton, D., Chattopadhyay, S., Fakra, S., Johannessen, B., Newville, M., Pena, J., Pokrovski, G. S., Proux, O., Priolkar, K., Ravel, B. and Webb, S. M. (2009). "Comparison of EXAFS Foil Spectra from Around the World." Journal of Physics Conference Series 190(XAFS-14 Conference Proceedings): 012032.
  6. Zhang, G. X., Senko, J. M., Kelly, S. D., Tan, H., Kemner, K. M. and Burgos, W. D. (2009). "Microbial reduction of iron(III)-rich nontronite and uranium(VI)." Geochimica Et Cosmochimica Acta 73(12): 3523-3538.
  7. Kelly, S. D., Yang, N., Mickelson, G. E., Greenlay, N., Karapetrova, E., Sinkler, W. and Bare, S. R. (2009). "Structural characterization of Ni-W hydrocracking catalysts using in situ EXAFS and HRTEM." Journal of Catalysis 263(1): 16-33.

  8. Michalsen, M. M., Peacock, A. D., Smithgal, A. N., White, D. C., Spain, A. M., Sanchez-Rosario, Y., Krumholz, L. R., Kelly, S. D., Kemner, K. M., Mckinley, J., Heald, S. M., Bogle, M. A., Watson, D. B. and Istok, J. D. (2009). "Treatment of Nitric Acid-, U(VI)-, and Tc(VII)-Contaminated Groundwater in Intermediate-Scale Physical Models of an In Situ Biobarrier." Environmental Science & Technology 43(6): 1952-1961.

  9. Burgos, W. D., McDonough, J. T., Senko, J. M., Zhang, G. X., Dohnalkova, A. C., Kelly, S. D., Gorby, Y. and Kemner, K. M. (2008). "Characterization of uraninite nanoparticles produced by Shewanella oneidensis MR-1." Geochimica Et Cosmochimica Acta 72(20): 4901-4915.

  10. Phillips, D. H., Watson, D. B., Kelly, S. D., Ravel, B. and Kemner, K. M. (2008). "Deposition of uranium precipitates in dolomitic gravel fill." Environmental Science & Technology 42(19): 7104-7110.

  11. O'Loughlin, E. J., Kelly, S. D., Boyanov, M. I. and Kemner, K. M. (2008). "Interactions of U(VI) with secondary mineralization products from the bioreduction of Fe(III) oxides." Geochimica Et Cosmochimica Acta 72(12): A694-a694.

  12. D. G. Beak, R. T. Wilkin, R. G. Ford, and S. D. Kelly. Examination of arsenic speciation in sulfidic solutions using X-ray absorption spectroscopy, Environmental Science & Technology 42(5), 1643-1650, Mar 1, 2008.

  13. S. D. Kelly, K. M. Kemner, J. Carley, D. Phillips, P. Jardine, D. Watson, C. S. Criddle, and W.-M. Wu. Uranium Speciation in Sediments Before and After In Situ Bioreduction, Environmental Science & Technology, Envionmental Science & Technology 42(5) 1558-1567, 2008.

  14. J. M. Senko, S. D. Kelly, A. C. Dohnalkova, J. T. McDonough, K. M. Kemner, and W. D. Burgos. The Effect of U(VI) Bioreduction Kinetics on Subsequent Reoxidation of Biogenic U(IV), Geochimica Et Cosmochimica Acta 71(19), 4644-4654, Oct 1, 2007.

  15. W. M. Wu, J. Carley, J. Luo, M. A. Ginder-Vogel, E. Cardenas, M. B. Leigh, C. C. Hwang, S. D. Kelly, C. M. Ruan, L. Y. Wu, J. Van Nostrand, T. Gentry, K. Lowe, T. Mehlhorn, S. Carroll, W. S. Luo, M. W. Fields, B. H. Gu, D. Watson, K. M. Kemner, T. Marsh, J. Tiedje, J. Z. Zhou, S. Fendorf, P. K. Kitanidis, P. M. Jardine, and C. S. Criddle. In Situ Bioreduction of Uranium (VI) to Submicromolar Levels and Reoxidation by Dissolved Oxygen, Environmental Science & Technology 41(16), 5716-5723, Aug 15, 2007.

  16. S. R. Bare, N. Yang, S. D. Kelly, G. E. Mickelson, and F. S. Modica. Design and operation of a high pressure reaction cell for in situ X-ray absorption spectroscopy, Catalysis Today 126(1-2), 18-26, Aug 15, 2007. (see www.xafs.org/ShellyKelly )
  17. W. D. Burgos, J. M. Senko, B. A. Dempsey, E. E. Roden, J. J. Stone, K. M. Kenmer, and S. D. Kelly. Soil Humic Acid Decreases Biological Uranium(VI) Reduction by Shewanella putrefaciens CN32, Environmental Engineering Science 24(6), 755-761, Jul-Aug, 2007.
  18. S. D. Kelly, K. M. Kemner, and S. C. Brooks. X-ray Absorption Spectroscopy Identifies Calcium-Uranyl-Carbonate Complexes at Environmental Concentrations, Geochimica Et Cosmochimica Acta 71(4), 821-834, Feb 15, 2007.
  19. G. E. Fryxell, S. V. Mattigod, Y. H. Lin, H. Wu, S. Fiskum, K. Parker, F. Zheng, W. Yantasee, T. S. Zemanian, R. S. Addleman, J. Liu, K. Kemner, S. Kelly, and X. D. Feng. Design and Synthesis of Self-Assembled Monolayers on Mesoporous Supports (SAMMS): The Importance of Ligand Posture in Functional Nanomaterials, Journal of Materials Chemistry 17(28), 2863-2874, 2007.

  20. M. M. Michalsen, B. A. Goodman, S. D. Kelly, K. M. Kemner, J. P. McKinley, J. W. Stucki, and J. D. Istok. Uranium and Technetium Bio-Immobilization in Intermediate-Scale Physical Models of an In Situ Bio-Barrier, Environmental Science & Technology 40(22), 7048-7053, Nov 15, 2006.

  21. Kemner, K. M.; Kelly, S. D. Synchrotron-based techniques for monitoring metal transformation. In Manual of Environmental Microbiology, Third ed.; Hurst, C. J., Ed. ASM Press: Washington, DC, 2007; pp 1183-1194.
  22. B. Ravel, S.D. Kelly, “The difficult chore of measuring coordination number by EXAFS”, 13th International Conference on X-ray Absorption Fine Structure, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 150 (2007).
  23. B. Ravel, S. D. Kelly, D. Gorman-Lewis, M. I. Boyanov, J. B. Fein and K. M. Kemner, “A pH-dependent X-ray Absorption Spectroscopy study of U adsorption to bacterial cell walls”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 202, 2007.
  24. Simon R. Bare, N. Yang, S.D. Kelly, G.E. Mickelson, and F.S. Modical, “Design and Operation of an in situ High Pressure Reaction Cell for X-ray Absorption Spectroscopy”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper), 882, 622 (2007).
  25. N. Yang, G.E. Mickelson, N. Greenlay, S.D. Kelly, and Simon R. Bare, “In situ EXAFS of Ni-W Hydrocracking Catalysts”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 663 (2007).
  26. N. Yang, G.E. Mickelson, N. Greenlay, S.D. Kelly, F.D. Vila, J. Kas, J.J. Rehr, and Simon R Bare, “Size and Shape of Rhenium Nanoparticles”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 591 (2007).
  27. Matthew Ginder-Vogel, S.D. Kelly, Craig S. Criddle, Wei-min Wu, Jack Carley, Phillip Jardine, Kenneth M. Kemner, Scott Fendorf, “Micro-scale Heterogeneity in Biogeochemical Uranium Cycling”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 190 (2007).
  28. Ken Kemner, Ed O’Loughlin, S.D. Kelly, Bruce Ravel, Maxim Boyanov, Deirdre Sholto-Douglas, Barry Lai, Russ Cook, Everett Carpenter, Vince Harris, Ken Nealson, “XAFS And X-ray And Electron Microscopy Investigations Of Radionuclide Transformations At The Mineral-Microbe Interface” American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 250 (2007).
  29. Bhoopesh Mishra, Jeremy B. Fein, Maxim I. Boyanov, S. D. Kelly, Kenneth M. Kemner and Bruce A. Bunker, “Comparison of Cd Binding Mechanisms by Gram-Positive, Gram-Negative and Consortia of Bacteria Using XAFS”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 343 (2207).
  30. S D Kelly and Bruce Ravel, “EXAFS Analysis With Self-Consistent Atomic Potentials “, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 135 (2007).
  31. S D Kelly and Bruce Ravel, “EXAFS Energy Shift and Structural Parameters”, American Institute of Physics Conference Proceedings, Accepted July 2006. (3-page refereed paper). 882, 132 (2007).
  32. S. Chattopadhyay, S.D. Kelly, T. Shibata, R. Viswanatha, M. Balasubramanian, S. Stoupin, C.U. Segre, D.D. Sarma,“EXAFS Studies of Nanocrystals of Zn1-xMnxO: A Dilute Magnetic Semiconductor Oxide System”, American Institute of Physics Conference Proceedings, 882, 809 (2007).
  33. W. D. Burgos, J. M. Senko, B. A. Dempsey, E. E. Roden, J. J. Stone, K. M. Kemner, and S. D. Kelly; “Soil Humic Acid Decreases Biological Uranium(VI) Reduction by Shewanella putrefaciencs CN32”, Environmental Engineering Science, 2007, 24(2), 200-206.

  34. Zhang, Z.; Fenter, P.; Kelly, S. D.; Catalano, J. G.; Bandura, A. V.; Kubicki, J. D.; Sofo, J. O.; Wesolowski, D. J.; Machesky, M. L.; Sturchio, N. C.; Bedzyk, M. J., Structure of hydrated Zn2+ at the rutile TiO2 (110)-aqueous solution interface: Comparison of X-ray standing wave, X-ray absorption spectroscopy, and density functional theory results. Geochimica Et Cosmochimica Acta 2006, 70, (16), 4039-4056.

  35. S.D. Kelly, E.T. Rasbury, S. Chattopadhyay, A.J. Kropf, K.M. Kemner, “Evidence of a Stable uranyl site in Ancient Organic-Rich Calcite”, Environ. Sci. Technol. 40, 2262-2268 2006.
  36. Kemner, K. M., E. J. O’Loughlin, S. D. Kelly, and M. I. Boyanov. "Synchrotron x-ray investigations of mineral-microbe-metal interactions and their effects on metal transformations" Elements, 2005 1(4), 217-221.
  37. S.D. Kelly, K.M. Kemner, S.C. Brooks, J.K. Fredrickson, S.L. Carroll, D.W. Kennedy, J.M. Zachara, A.E. Plymale, and S. Fendorf, “Ca-UO2-CO3 complexation – Implications for bioremediation of U(VI),” Physica Scripta, T115, 915-917 May 2005.

  38. Chattopadhyay S., Kelly S. D., Palkar V. R., Fan L., and Segre C. U., “Investigation of Size Effects in Magnetoelectric BiFeO3”. Physica Scripta T115, 709-713. April 2005.

  39. Kelly S. D., Kemner K. M., Brooks S. C., Fredrickson J. K., Carroll S. L., Kennedy D. W., Zachara J. M., Plymale A. E., and Fendorf S. “Ca-UO2-CO3 Complexation - Implications for Bioremediation of U(VI)”. Physica Scripta T115, 915-917, April 2005.
  40. K.M. Kemner, S.D. Kelly, E.J. O’Loughlin, L.A. Moe, B.G. Fox, M.I. Donnelly, and C.S. Giometti, “XRF and XAFS analysis of electrophoretically isolated non-denatured proteins”, Physica Scripta, T115, 940-942, April 2005.
  41. Suzuki, Y.; Kelly, S. D.; Kemner, K. M.; Banfield, J. F. Direct microbial reduction and subsequent preservation of uranium in natural near-surface sediment. Applied and Environmental Microbiology 2005, 71, 1790-1797.
  42. G.E. Fryxell, Y.Lin, S. Fisdum, J.C. Birnbaum, H. Wu, K. Kemner, S.Kelly “Actinide sequestration using self-assembled monolayers on mesoporous supports”, Environ. Sci. Technol. 39 1324-1331 Feb. 2005.
  43. Fryxell, G. E.; Wu, H.; Lin, Y.; Shaw, W. J.; Birnbaum, J. C.; Linehan, J. C.; Nie, Z.; Kemner, K.M.; Kelly, S.D., “Lanthanide selective sorbents : self-assembled monolayers on mesoporous supports (SAMMS)”, J. Mater. Chem. 14 (22) 3356-3363 (2004)

  44. B. H. Jeon, S. D. Kelly, K. M. Kemner, M. O. Barnett, W. D. Burgos, B. A. Dempsey and E. E. Roden. "Microbial reduction of U(VI) at the solid-water interface." Environmental Science & Technology 38(21): pp 5649-5655, NOV 1 2004.

  45. K.M. Kemner, S.D. Kelly, B. Lai, J. Maser, E.J. O'Loughlin, D. Sholto-Douglas, Z. Cai, M.A. Schneegurt, C.F. Kulpa, K.H. Nealson,, “Elemental and Redox Analysis of Single Bacterial Cells by X-ray Microbeam Analysis”, Science 306, 686, October 2004.
  46. Y. Suzuki, S. D. Kelly, K.M. Kemner, J. F. Banfield, “Enzymatic U(VI) reduction by Desulfosporosinus species”, Radiochim. Acta 92, 11-16, Jan. (2004).
  47. M.I. Boyanov, S.D. Kelly, K.M. Kemner, B.A. Bunker, J.B. Fein, D.A. Fowle, "Adsorption of Cadmium to B. subtilis Bacterial Cell Walls: a pH-Dependent XAFS Spectroscopy Study," Geochem. Cosmo. Acta., 67, 3299-3311, Sept 2003.
  48. E.J. O'Loughlin, S.D. Kelly, K.M. Kemner, R. Csencsits, R.E. Cook, "Reduction of AgI, AuIII, CuII, and HgII by FeII/FeIII hydroxysulfate green rust," Chemosphere, 53, 437-446 Sept. 2003.
  49. S.D. Kelly, M. Newville, L. Cheng, K.M. Kemner, S. Sutton, P. Fenter, N.C. Sturchio, C. Spotl, “Uranyl in calcite,” Environmental Science and Technology, 37(7), pg 1284-1287, April 2003.
  50. S.C. Brooks, J.K. Fredrickson, S.L. Carroll, D.W. Kennedy, J.M. Zachara, A.E. Plymale, S. Fendorf, K.M. Kemner, and S.D. Kelly, "Inhibition of Bacterial U(VI) Reduction by Calcium," Environmental Science and Technology, 37, 1850-1858, April 2003.
  51. Y. Suzuki, S. D. Kelly, K. M. Kemner, J. F. Banfield, "Microbial Population Stimulated for Hexavalent Uranium Reduction in Uranium Mine Sediment," Applied and Environmental Microbiology, 69(3), 1337-1346, Mar. 2003.
  52. E.J. O'Loughlin, S.D. Kelly, R.E. Cook, R. Csencsits, K.M. Kemner, "Reduction of uranium(VI) by mixed iron(II)/iron(III) hydroxide (green rust): formation of UO2 nanoparticles," Environ. Sci. Technol., 37, 721-727, Feb. 2003.
  53. S.D. Kelly, K. M. Kemner, J. B. Fein, D. A. Fowle, M. I. Boyanov, B. A. Bunker, N. Yee, "X-ray absorption fine-structure determination of pH dependent U-bacterial cell wall interactions", Geochem. Cosmo. Acta, 66(22) 3875-3891, Nov 2002.
  54. Y. Suzuki, S.D. Kelly, K. M. Kemner, J. F. Banfield, "Nanometre-size products of uranium bioreduction," Nature. 419(6903) 134, Sep 2002.
  55. J. G. Lack, S. K. Chaudhuri, S.D. Kelly, K. M. Kemner, S M. O'Connor, J.D. Coates, "Immobilization of Radionuclides and Heavy Metals through Anaerobic Bio-Oxidation of Fe(II)", Applied and Environmental Microbiology, 68(6) 2704-2710, Jun 2002.
  56. S.D. Kelly, K.M. Kemner, G.E. Fryxell, J. Liu, S.V. Mattigod, K.F. Ferris, "X-ray Absorption Fine-Structure Spectroscopy Study of the Interactions Between Contaminant Tetrahedral Anions and Self-Assembled Monolayers on Mesoporous Supports," The Journal of Physical Chemistry B 105 (27) 6337-6346, Aug 2001.
  57. K. M. Kemner, S.D. Kelly, A. I. Tsapin, M. G. Goldfeld, K. H. Nealson, K. Orlandini, "XAS investigations of Fe(VI)," Journal of Synchrotron Radiation 8 949-951, 2001.
  58. S.D. Kelly, M. Boyanov, B. A. Bunker, J. B. Fein, K. M. Kemner, "Determination of functional groups responsible for pH-dependent complexation of Cd and U to bacterial surfaces," Journal of Synchrotron Radiation. 8 946-948, 2001.
  59. S.D. Kelly, K. M. Kemner, G. E. Fryxell, J. Liu, S. V. Mattigod, "X-ray absorption fine structure spectroscopy determination of binding mechanism of tetrahedral anions to self assembled monolayers on mesoporous supports," Journal of Synchrotron Radiation 8 922-924, 2001.
  60. S.D. Kelly, R. Ingalls, and E. A. Stern, "Determining crystalline atomic positions using XAFS, a new addition to the UWXAFS analysis package," Journal of Synchrotron Radiation. 8 311-313, 2001.

  61. A. I. Tsapin, M. G. Goldfeld, G. D. McDonald, K. H. Nealson, B. Moskovitz, P. Solheid, K. M. Kemner, S.D. Kelly, K. A. Orlandini, "Iron(VI): Hypothetical Candidate for the Martian Oxidant," Icarus 147 68-78, 2000.

  62. M. Labrenz, G. K. Druschel, T. Thomsen-Ebert, B. Gilbert, S. A. Welch, K. M. Kemner, G. A. Logan, R. E. Summons, G. De Stasio, P. L. Bond, B. Lai, S.D. Kelly, J. F. Banfield, "Sphalerite (ZnS) deposits forming in natural biofilms of sulfate reducing bacteria," Science 290 1744-1747, 2000.

  63. S.D. Kelly, R. Ingalls, F. Wang, B. Ravel and D. Haskel, "X-ray-absorption fine-structure study of the B1-to-B2 phase transition in RbCl," Physical Review B 57, 7543-7550, 1998.

  64. A. I. Frenkel, F. M. Wang, S.D. Kelly, R. Ingalls, D. Haskel, E. A. Stern and Y. Yacoby, "Local structural changes in KNbO3 under high pressure", Physical Review B 56, 10869, 1997.

ShellyKelly/pubs (last edited 2010-10-28 15:59:09 by ShellyKelly)